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Pull requests: nf-core/modules

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Pull requests list

feat: chelae/trim
#11896 opened Jun 5, 2026 by emmcauley Contributor Loading…
8 of 17 tasks
Update module amplify/predict
#11895 opened Jun 5, 2026 by jasmezz Contributor Loading…
2 of 17 tasks
Add fgumi/simplex and fgumi/duplex size/xl
#11891 opened Jun 5, 2026 by SPPearce Contributor Loading…
Update pbjasmine Ready for Review
#11890 opened Jun 5, 2026 by YiJin-Xiong Member Loading…
17 tasks
drop ext.when from modules size/xl
#11880 opened Jun 4, 2026 by matthdsm Contributor Loading…
17 tasks
Add snpclustering subworkflow
#11879 opened Jun 4, 2026 by dbaku42 Contributor Loading…
Update DEEPVARIANT/* modules to support phasing.
#11859 opened Jun 4, 2026 by awgymer Contributor Loading…
17 tasks
New module savana/to Ready for Review
#11849 opened Jun 3, 2026 by manascripts Member Loading…
11 of 14 tasks
Add new component: trtools_dumpstr Ready for Review
#11848 opened Jun 3, 2026 by KondratievaOlesya Loading…
13 tasks done
Update to topic isoseq3/tag
#11844 opened Jun 3, 2026 by bhargava-morampalli Contributor Loading…
17 tasks
New module bwafastalign-index size/m
#11843 opened Jun 3, 2026 by peterpru Member Loading…
1 of 17 tasks
New module bwafastalign-mem size/m
#11840 opened Jun 3, 2026 by peterpru Member Loading…
17 tasks
updated stringtie Ready for Review size/xl
#11832 opened Jun 2, 2026 by khersameesh24 Contributor Loading…
3 tasks
New module baysor Ready for Review size/l
#11790 opened May 29, 2026 by khersameesh24 Contributor Loading…
4 tasks
Add new module: nanomonsv/get Ready for Review
#11788 opened May 29, 2026 by manascripts Member Loading…
10 of 17 tasks
Add varnet (https://github.com/skandlab/VarNet)
#11787 opened May 29, 2026 by kiranchari Loading…
1 task
Add regenie/runl1 module
#11768 opened May 26, 2026 by lyh970817 Contributor Draft
14 tasks done
Add regenie/runl0 module Ready for Review
#11767 opened May 26, 2026 by lyh970817 Contributor Loading…
14 tasks done
feat: support task.ext.args in sentieon/gvcftyper size/xs
#11763 opened May 26, 2026 by nicorap Contributor Loading…
11 of 14 tasks
Upgrade environment schema to support additional scenarios
#11758 opened May 25, 2026 by toniher Member Loading…
Add dotseq/dotseq
#11742 opened May 21, 2026 by pinin4fjords Member Loading…
7 tasks done
new module: custom/bed12codonpositions Ready for Review
#11733 opened May 21, 2026 by pinin4fjords Member Loading…
4 tasks done
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