Skip to content

Pull requests: nf-core/modules

New pull request New
184 Open 8,478 Closed
184 Open 8,478 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

feat: chelae/trim
#11896 opened Jun 5, 2026 by emmcauley Contributor Loading…
8 of 17 tasks
1
Update module amplify/predict
#11895 opened Jun 5, 2026 by jasmezz Contributor Loading…
2 of 17 tasks
1
Add new nf-core memote module with snapshot report output and nf-test coverage
#11893 opened Jun 5, 2026 by Copilot AI • Draft
1
@brovolia
Add fgumi/simplex and fgumi/duplex size/xl
#11891 opened Jun 5, 2026 by SPPearce Contributor Loading…
Update pbjasmine Ready for Review
#11890 opened Jun 5, 2026 by YiJin-Xiong Member Loading…
17 tasks
drop ext.when from modules size/xl
#11880 opened Jun 4, 2026 by matthdsm Contributor Loading…
17 tasks
Add snpclustering subworkflow
#11879 opened Jun 4, 2026 by dbaku42 Contributor Loading…
Update DEEPVARIANT/* modules to support phasing.
#11859 opened Jun 4, 2026 by awgymer Contributor Loading…
17 tasks
New module savana/to Ready for Review
#11849 opened Jun 3, 2026 by manascripts Member Loading…
11 of 14 tasks
Add new component: trtools_dumpstr Ready for Review
#11848 opened Jun 3, 2026 by KondratievaOlesya Loading…
13 tasks done
1
5
Update to topic isoseq3/tag
#11844 opened Jun 3, 2026 by bhargava-morampalli Contributor Loading…
17 tasks
1
@bhargava-morampalli
3
New module bwafastalign-index size/m
#11843 opened Jun 3, 2026 by peterpru Member Loading…
1 of 17 tasks
@peterpru
7
New module bwafastalign-mem size/m
#11840 opened Jun 3, 2026 by peterpru Member Loading…
17 tasks
@peterpru
1
updated stringtie Ready for Review size/xl
#11832 opened Jun 2, 2026 by khersameesh24 Contributor Loading…
3 tasks
1
2
New module baysor Ready for Review size/l
#11790 opened May 29, 2026 by khersameesh24 Contributor Loading…
4 tasks
1
12
Add new module: nanomonsv/get Ready for Review
#11788 opened May 29, 2026 by manascripts Member Loading…
10 of 17 tasks
Add varnet (https://github.com/skandlab/VarNet)
#11787 opened May 29, 2026 by kiranchari Loading…
1 task
20
Add regenie/runl1 module
#11768 opened May 26, 2026 by lyh970817 Contributor • Draft
14 tasks done
Add regenie/runl0 module Ready for Review
#11767 opened May 26, 2026 by lyh970817 Contributor Loading…
14 tasks done
feat: support task.ext.args in sentieon/gvcftyper size/xs
#11763 opened May 26, 2026 by nicorap Contributor Loading…
11 of 14 tasks
2
Upgrade environment schema to support additional scenarios
#11758 opened May 25, 2026 by toniher Member Loading…
4
Add dotseq/dotseq
#11742 opened May 21, 2026 by pinin4fjords Member Loading…
7 tasks done
2
feat(custom): orfnormalise + orfmerge modules + orftable_fasta_gtf_buildorfcatalogue subworkflow
#11740 opened May 21, 2026 by pinin4fjords Member Loading…
5 tasks done
1
feat(vcontact3): add vcontact3/prepareddatabases module
#11738 opened May 21, 2026 by olawal1001 • Draft
17 tasks
23
new module: custom/bed12codonpositions Ready for Review
#11733 opened May 21, 2026 by pinin4fjords Member Loading…
4 tasks done
1
ProTip! Follow long discussions with comments:>50.