Support additional minimizer schemes #4

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1. RagnarGrootKoerkamp commented on Mar 25, 2025

   

   RagnarGrootKoerkamp

   on Mar 25, 2025

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   Oh hey, I see I never replied to this.

   Yeah, adding additional schemes is something that would eventually be nice to do, but it's not very high on my priority list right now.
   Would be happy to supervise a PR on it though.

   To add:

   • mod minimizer, which should be relatively easy: all that's needed is a change of parameter values and a modulo which can be done using fastmod, and since values are small, that should all fit in 32bit operations fine.
   • the ABB+ scheme from here: https://curiouscoding.nl/posts/minimizers/#discussion, which is actually simpler than NTHash, since it just uses a different order on kmers.
   • the open-closed minimizer will be more complicated probably -- haven't really thought about this yet.
2. RagnarGrootKoerkamp

   changed the title [-]open and closed syncmer with SIMD[/-] [+]Support additional minimizer schemes[/+] on Mar 25, 2025
3. jianshu93 commented on May 14, 2025

   

   jianshu93

   on May 14, 2025

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   Thanks for the response anyway. I will close it for now. -Jianshu