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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.7k 521

  2. TRIDENT TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 627 144

  3. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology - Nature Medicine

    Python 369 40

  4. UNI UNI Public

    Pathology Foundation Model - Nature Medicine

    Jupyter Notebook 776 94

  5. CONCH CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    Python 528 54

  6. CORAL CORAL Public

    Spatial biology processing suite

    Jupyter Notebook 76 13

Repositories

Showing 10 of 39 repositories
  • viper Public
    mahmoodlab/viper's past year of commit activity
    Python 9 0 0 0 Updated Sep 3, 2026
  • 3DCPath-datasets Public

    Compilation of publicly available datasets in 3D Computational Pathology

    mahmoodlab/3DCPath-datasets's past year of commit activity
    34 0 0 0 Updated Sep 2, 2026
  • TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    mahmoodlab/TRIDENT's past year of commit activity
    Python 627 144 22 (1 issue needs help) 21 Updated Aug 28, 2026
  • CORAL Public

    Spatial biology processing suite

    mahmoodlab/CORAL's past year of commit activity
    Jupyter Notebook 76 13 3 0 Updated Aug 28, 2026
  • KRONOS Public

    Foundation Model for Multiplex Spatial Proteomic Images

    mahmoodlab/KRONOS's past year of commit activity
    Jupyter Notebook 210 38 3 2 Updated Jul 27, 2026
  • MAMMOTH Public

    A parameter-efficient mixture-of-experts module for computational pathology - ICLR

    mahmoodlab/MAMMOTH's past year of commit activity
    Python 106 13 1 0 Updated May 17, 2026
  • HEST Public

    Integrating histology and spatial transcriptomics - NeurIPS 2024

    mahmoodlab/HEST's past year of commit activity
    Jupyter Notebook 436 53 23 3 Updated Apr 16, 2026
  • SEAL Public

    Spatial Expression-Aligned Learning to improve pathology foundation models

    mahmoodlab/SEAL's past year of commit activity
    48 3 1 1 Updated Feb 17, 2026
  • MIL-Lab Public

    Feather - Lightweight supervised slide foundation models (ICML 2025)

    mahmoodlab/MIL-Lab's past year of commit activity
    Python 155 24 1 0 Updated Feb 5, 2026
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology - Nature Medicine

    mahmoodlab/TITAN's past year of commit activity
    Python 369 40 5 0 Updated Dec 13, 2025
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People

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