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Pull requests list

Test exported decoder models via automatic instance segmentation
#1348 opened Aug 23, 2026 by nilsmechtel Contributor Loading…
1
Invalidate cached image embeddings when forward() receives a different image
#1347 opened Aug 23, 2026 by nilsmechtel Contributor Loading…
Add prototype for geodesic hybrid distance transform
#1343 opened Aug 21, 2026 by anwai98 Collaborator Loading…
@anwai98
2
Generalize and extend refinement round for APG
#1340 opened Aug 21, 2026 by constantinpape Contributor • Draft
2
Add existing Labels layers as SAM mask inputs
#1314 opened Jul 31, 2026 by arthursw • Draft
6
Support tracking with existing segmentations in tracking annotator
#1313 opened Jul 30, 2026 by anwai98 Collaborator • Draft
@anwai98
1
Some advanced updates to annotator tools
#1265 opened Jun 30, 2026 by anwai98 Collaborator • Draft
Add support scripts for C. albicans data finetuning
#1224 opened Jun 8, 2026 by anwai98 Collaborator • Draft
1
@anwai98
2
Add preliminary scripts towards uSegment3D integration
#1179 opened Mar 23, 2026 by anwai98 Collaborator • Draft
Implement better normalization for embedding computation
#1058 opened Jun 5, 2025 by constantinpape Contributor • Draft
Update training logic to computes loss over logits
#990 opened Apr 7, 2025 by anwai98 Collaborator • Draft
11
Implement reproducibility functionality for commit file
#976 opened Mar 28, 2025 by constantinpape Contributor • Draft
2
Create pull request template
#973 opened Mar 28, 2025 by anwai98 Collaborator • Draft
Update issue templates
#924 opened Mar 9, 2025 by anwai98 Collaborator Loading…
Reactivate training test
#818 opened Dec 21, 2024 by constantinpape Contributor Loading…
1
Grid-search after training
#679 opened Aug 27, 2024 by constantinpape Contributor • Draft
Start to implement segmentation folder for the image series annotator
#627 opened Jun 3, 2024 by constantinpape Contributor • Draft
Switch to PyPI Trusted Publishing, remove twine
#614 opened May 23, 2024 by GenevieveBuckley Collaborator • Draft
1
2
Multiscale image layer support
#590 opened May 6, 2024 by constantinpape Contributor Loading…
2
Bioengine integration
#513 opened Apr 12, 2024 by constantinpape Contributor • Draft
109 macos installer
#164 opened Aug 26, 2023 by paulhfu Collaborator Loading…
2
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