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@compgenomicslab

Comparative Genomics and Metagenomics Lab at CBGP (UPM-INIA)

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  1. TreeProfiler TreeProfiler Public

    tree visualization for tree + annotation data

    Python 63 5

  2. deluxpore deluxpore Public

    Automatized nanopore long read demultiplexing pipeline (from Claudia Sanchis previous work)

    Python 2

  3. phylocloud_help phylocloud_help Public

    1

  4. Programacion-para-bioinformatica Programacion-para-bioinformatica Public

    Forked from ginerorama/Introduction-to-Bioinformatic-for-Biologists

    Conceptos de Programación en BASH

    Shell 1

  5. metaCR metaCR Public

    A catalogue of 149,326 prokaryotic chemoreceptor genes from metagenomic and genomic data (GMGCv1 - http://gmgc.embl.de), with MCPsignal and LBD annotations. Includes ecological metadata from 13,174…

    1

  6. snake_projects snake_projects Public

    Workflows built using snakemake

    1

Repositories

Showing 10 of 19 repositories
  • deluxpore Public

    Automatized nanopore long read demultiplexing pipeline (from Claudia Sanchis previous work)

    compgenomicslab/deluxpore's past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Sep 9, 2026
  • deluxpore-benchmarking Public

    repository containing deluxpore demultiplexing software benchamrking scripts

    compgenomicslab/deluxpore-benchmarking's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 18, 2026
  • TreeProfiler Public

    tree visualization for tree + annotation data

    compgenomicslab/TreeProfiler's past year of commit activity
    Python 63 GPL-3.0 5 4 0 Updated Jun 17, 2025
  • demultiplex-ont-illumina Public

    This pipeline is an in-house pipeline for demultiplexing Oxford Nanopore sequencing reads that have been multiplexed using Illumina-style dual indexes.

    compgenomicslab/demultiplex-ont-illumina's past year of commit activity
    Python 0 0 0 0 Updated May 26, 2025
  • metaCR Public

    A catalogue of 149,326 prokaryotic chemoreceptor genes from metagenomic and genomic data (GMGCv1 - http://gmgc.embl.de), with MCPsignal and LBD annotations. Includes ecological metadata from 13,174 metagenomes across 14 environments.

    compgenomicslab/metaCR's past year of commit activity
    1 0 0 0 Updated May 7, 2025
  • globalCR Public

    GlobalCR catalog offers a comprehensive resource of CR genes in both cultured and uncultured microorganisms. It includes taxonomic classification for each CR, predicted habitat distribution, and fine-grained subfamily classifications.

    compgenomicslab/globalCR's past year of commit activity
    0 0 0 0 Updated Jan 25, 2025
  • phylocloud_help Public
    compgenomicslab/phylocloud_help's past year of commit activity
    1 0 0 0 Updated Jun 26, 2024
  • Programacion-para-bioinformatica Public Forked from ginerorama/Introduction-to-Bioinformatic-for-Biologists

    Conceptos de Programación en BASH

    compgenomicslab/Programacion-para-bioinformatica's past year of commit activity
    Shell 1 7 0 0 Updated Feb 2, 2023
  • nf-core_shotgun_cbgp Public
    compgenomicslab/nf-core_shotgun_cbgp's past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Oct 6, 2022
  • GeCoViz_webapp Public Forked from jorgebotas/GeCoViz_webapp

    GeCoViz web application. A platform for genomic context exploration with a phylogenetic perspective

    compgenomicslab/GeCoViz_webapp's past year of commit activity
    JavaScript 0 1 0 0 Updated Aug 30, 2022
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