Remove unused contrib/, libdivsufsort/, and .travis.yml - #16
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Remove unused contrib/, libdivsufsort/, and .travis.yml#16traviswheeler wants to merge 1 commit into
traviswheeler wants to merge 1 commit into
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contrib/ held Lee Newberg's p7_thermo code, parked there in HMMER 3.0b1 and never compiled by any Makefile. libdivsufsort/ was nhmmer's suffix-array library; BATH removed nhmmer, and nothing in src/ includes or calls it, but every binary still linked against it. Removing it also drops its wiring from configure.ac and the Makefiles (rerun autoconf after pulling this). .travis.yml described HMMER's Travis setup; CI now lives in .github/workflows/release.yml. Also replace the HMMER- and frahmmer-era binary names in .gitignore with the bath* programs, and ignore the configure-generated titlepage_daemon.tex. Implemented with assistance from Claude (Fable 5)
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Removes three vestigial pieces that were part of HMMER but not used in BATH :
Also updates .gitignore: the bath* binaries replace the frahmmer names, and the configure-generated titlepage_daemon.tex is now ignored.
A full rebuild and testsuite run (make check, 126/126 exercises) pass on the pruned tree.
Generated with help from Claude (Fable 5)