| Repository | What it does | Get started |
|---|---|---|
| CyteArc | Out-of-core single-cell analysis for RNA, ATAC, protein, and multi-omic data. Scales to 100M+ cells, and every result traces back to the cells and parameters behind it. | pip install cytearc · Docs |
| CyteType | Evidence-backed cell type annotation for Scanpy / AnnData, with a Cell Ontology ID, confidence, and an HTML report for every cluster. | pip install cytetype · Docs · Paper |
| CyteTypeR | The same annotation workflow for Seurat objects. | devtools::install_github("NygenAnalytics/CyteTypeR") |
| CyteOnto | Semantic comparison of cell type labels in Cell Ontology space, for benchmarking annotators. | Hosted service. See the repo. |
Found a bug or want a feature? Open an issue on the relevant repository. For collaborations, roles, and internships, write to contact@nygen.io.
