fix when there are optional dependencies

.github/workflows/publish-pypi.yml

@@ -72,7 +72,7 @@ jobs:
     runs-on: ubuntu-latest
     environment:
       name: pypi
-      url: https://pypi.org/p/{{ project_name|replace('-', '_') }}
+      url: https://pypi.org/p/hatchit
     permissions:
       id-token: write  # IMPORTANT: mandatory for trusted publishing
     steps:

.github/workflows/run-tests.yml

@@ -51,6 +51,9 @@ jobs:
       - name: Install tox
         run: uv tool install tox --with tox-uv
 
+      - name: Install dependencies
+        run: uv sync --all-extras --python ${{ matrix.python }}
+
       - name: Run tests
         run: |
           tox -e default -- --cov --cov-branch --cov-report=xml

.pre-commit-config.yaml

@@ -53,3 +53,10 @@ repos:
 #   rev: v2.2.5
 #   hooks:
 #   - id: codespell
+
+- repo: https://github.com/PyCQA/bandit
+  rev: 1.7.9
+  hooks:
+    - id: bandit
+      args: ["-c", "pyproject.toml"]
+      additional_dependencies: ["bandit[toml]"]

CHANGELOG.md

@@ -5,6 +5,6 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## 0.1.0 - 0.1.2
+## 0.1.0 - 0.1.3
 
 - Switch to copier and modify the templates

pyproject.toml

@@ -1,14 +1,29 @@
 [project]
 name = "hatchit"
-dynamic = ["version"]
+dynamic = [
+    "version",
+]
 description = "Modern Python project scaffolder combining uv and hatch"
 readme = "README.md"
 authors = [
-    { name = "Jayaram Kancherla", email = "jayaram.kancherla@gmail.com" }
+    { name = "Jayaram Kancherla", email = "jayaram.kancherla@gmail.com" },
 ]
 requires-python = ">=3.10"
-dependencies = ["uv", "copier>=9.0.0"]
-keywords = ["scaffold", "uv", "hatch", "project", "generator", "template", "copier", "packaging", "pypi"]
+dependencies = [
+    "uv",
+    "copier>=9.0.0",
+]
+keywords = [
+    "scaffold",
+    "uv",
+    "hatch",
+    "project",
+    "generator",
+    "template",
+    "copier",
+    "packaging",
+    "pypi",
+]
 classifiers = [
     "Development Status :: 4 - Beta",
     "Programming Language :: Python :: 3",
@@ -20,7 +35,7 @@ classifiers = [
     "Operating System :: OS Independent",
     "License :: OSI Approved :: MIT License",
     "Intended Audience :: Developers",
-    "Topic :: Software Development :: Code Generators"
+    "Topic :: Software Development :: Code Generators",
 ]
 
 [project.urls]
@@ -33,30 +48,43 @@ Repository = "https://github.com/biocpy/hatchit"
 hatchit = "hatchit.cli:main"
 
 [build-system]
-requires = ["hatchling", "hatch-vcs"]
+requires = [
+    "hatchling",
+    "hatch-vcs",
+]
 build-backend = "hatchling.build"
 
 [tool.hatch.build.targets.wheel.force-include]
 "copier.yml" = "hatchit/copier.yml"
-"template" = "hatchit/template"
+template = "hatchit/template"
 
 [tool.hatch.version]
 source = "vcs"
 fallback-version = "0.1.0"
 
 [tool.ruff]
 line-length = 120
-src = ["src"]
-exclude = ["tests", "docs"]
+src = [
+    "src",
+]
+exclude = [
+    "tests",
+    "docs",
+]
 
 [tool.ruff.lint]
-extend-ignore = ["F821"]
+extend-ignore = [
+    "F821",
+]
 
 [tool.ruff.lint.pydocstyle]
 convention = "google"
 
 [tool.ruff.lint.per-file-ignores]
-"__init__.py" = ["E402", "F401"]
+"__init__.py" = [
+    "E402",
+    "F401",
+]
 
 [tool.ruff.format]
 docstring-code-format = true
@@ -67,16 +95,18 @@ strict = true
 
 [tool.pytest.ini_options]
 addopts = "--cov --cov-report term-missing"
-testpaths = ["tests"]
+testpaths = [
+    "tests",
+]
 
 [dependency-groups]
 dev = [
-    "furo",
-    "linkify-it-py",
-    "mypy",
-    "myst-nb",
     "pytest",
     "pytest-cov",
     "sphinx",
+    "myst-nb",
+    "furo",
     "sphinx-autodoc-typehints",
+    "linkify-it-py",
+    "mypy",
 ]

template/.github/workflows/run-tests.yml

@@ -51,6 +51,9 @@ jobs:
       - name: Install tox
         run: uv tool install tox --with tox-uv
 
+      - name: Install dependencies
+        run: uv sync --all-extras --python ${{ matrix.python }}
+
       - name: Run tests
         run: |
           tox -e default -- --cov --cov-branch --cov-report=xml

template/tox.ini

@@ -10,13 +10,13 @@ description = Invoke pytest to run automated tests
 allowlist_externals = uv
 skip_install = True
 commands =
-    uv run pytest {posargs}
+    uv run --all-extras pytest {posargs}
 
 [testenv:typecheck]
 description = Run static type checking with mypy
 skip_install = True
 commands =
-    uv run mypy src/
+    uv run --all-extras mypy src/
 
 [testenv:lint]
 description = Perform static analysis and style checks

tox.ini

@@ -10,13 +10,13 @@ description = Invoke pytest to run automated tests
 allowlist_externals = uv
 skip_install = True
 commands =
-    uv run pytest {posargs}
+    uv run --all-extras pytest {posargs}
 
 [testenv:typecheck]
 description = Run static type checking with mypy
 skip_install = True
 commands =
-    uv run mypy src/
+    uv run --all-extras mypy src/
 
 [testenv:lint]
 description = Perform static analysis and style checks