diff --git a/.github/workflows/scheduled_updates.yml b/.github/workflows/scheduled_updates.yml index 6ddb07ad16e..5cfd16352a2 100644 --- a/.github/workflows/scheduled_updates.yml +++ b/.github/workflows/scheduled_updates.yml @@ -88,6 +88,14 @@ jobs: echo "dirty=true" >> $GITHUB_OUTPUT fi id: status + - name: Setup Pixi + uses: prefix-dev/setup-pixi@v0.9.4 + if: steps.status.outputs.dirty == 'true' + - name: Update pixi.toml and pixi.lock for macos-intel CI job + run: | + pixi run python tools/write-pixi-toml.py + pixi lock --no-install --manifest-path tools/ci/macos-intel/ + if: steps.status.outputs.dirty == 'true' - uses: j178/prek-action@v2.0.6 if: steps.status.outputs.dirty == 'true' - name: Create PR diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 34fc1cb94c2..107804a80c9 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -61,7 +61,7 @@ jobs: kind: pip - os: macos-15-intel # Intel python: '3.13' - kind: pip + kind: pixi - os: ubuntu-latest python: '3.12' kind: minimal @@ -104,9 +104,37 @@ jobs: python-version: ${{ matrix.python }} if: startswith(matrix.kind, 'pip') || matrix.kind == 'minimal' id: setup-python + # Python (if pixi) + - uses: prefix-dev/setup-pixi@v0.10.0 + with: + manifest-path: tools/ci/macos-intel/pixi.toml + # https://github.com/prefix-dev/setup-pixi/issues/139 + # activate-environment: true + # frozen: true + run-install: false + if: matrix.kind == 'pixi' + - name: Install development version of MNE into pixi environment + run: pixi add --editable --pypi 'mne @ file:///Users/runner/work/mne-python/mne-python' + if: matrix.kind == 'pixi' + - uses: prefix-dev/setup-pixi@v0.10.0 + with: + manifest-path: tools/ci/macos-intel/pixi.toml + # https://github.com/prefix-dev/setup-pixi/issues/139 + activate-environment: true + frozen: true + if: matrix.kind == 'pixi' # Workaround macOS path behavior with login shells (which puts system Python first) - - run: echo "export PATH=\"$(dirname ${{ steps.setup-python.outputs.python-path }}):$PATH\"" | tee -a ~/.bash_profile # zizmor: ignore[template-injection] - if: startswith(matrix.kind, 'pip') && startswith(matrix.os, 'macos') + - run: | # zizmor: ignore[template-injection] + if [[ $MNE_CI_KIND == "pip" ]]; then + prepend_path="$(dirname ${{ steps.setup-python.outputs.python-path }})" + elif [[ $MNE_CI_KIND == "pixi" ]]; then + prepend_path="${{ github.workspace }}/tools/ci/macos-intel/.pixi/envs/default/bin" + else + echo "Unsupported CI Kind: $MNE_CI_KIND" + exit 1 + fi + echo "export PATH=\"$prepend_path:$PATH\"" | tee -a ~/.bash_profile + if: (startswith(matrix.kind, 'pip') || matrix.kind == 'pixi') && startswith(matrix.os, 'macos') # Python (if conda) - uses: mamba-org/setup-micromamba@v3 with: @@ -130,6 +158,7 @@ jobs: - run: bash ./tools/github_actions_verify_python.sh "${{ matrix.python }}" - run: bash ./tools/github_actions_dependencies.sh timeout-minutes: 10 + if: matrix.kind != 'pixi' - run: python ./tools/github_actions_check_old_env.py if: matrix.kind == 'old' # Minimal commands on Linux (macOS stalls) diff --git a/tools/ci/macos-intel/pixi.lock b/tools/ci/macos-intel/pixi.lock new file mode 100644 index 00000000000..0d0de6091ef --- /dev/null +++ b/tools/ci/macos-intel/pixi.lock @@ -0,0 +1,7169 @@ +version: 6 +environments: + default: + channels: + - url: https://conda.anaconda.org/conda-forge/ + indexes: + - https://pypi.org/simple + packages: + osx-64: + - conda: https://conda.anaconda.org/conda-forge/osx-64/_openmp_mutex-4.5-7_kmp_llvm.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/_python_abi3_support-1.0-hd8ed1ab_2.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/aiohappyeyeballs-2.7.1-pyhd8ed1ab_0.conda + - 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Its not set anywhere?? if [ "${MNE_CI_KIND}" != "minimal" ]; then python -uc "import mne; mne.datasets.testing.data_path(verbose=True)" # Make read-only to make sure we don't modify its contents diff --git a/tools/github_actions_env_vars.sh b/tools/github_actions_env_vars.sh index 510a50c9e66..3b03ee36a57 100755 --- a/tools/github_actions_env_vars.sh +++ b/tools/github_actions_env_vars.sh @@ -61,6 +61,15 @@ elif [[ "$MNE_CI_KIND" == "conda" ]]; then echo "MNE_LOGGING_LEVEL=warning" | tee -a $GITHUB_ENV echo "MNE_TEST_ALLOW_SKIP=.*(on conda|Requires (spm|brainstorm|misc) dataset|CUDA not|Flakey verbose behavior|PySide6 causes segfaults|SCIPY_ARRAY_API).*" | tee -a $GITHUB_ENV echo "MNE_QT_BACKEND=PySide6" | tee -a $GITHUB_ENV +# NON-DRY but just gonna get it working and then refactor. +elif [[ "$MNE_CI_KIND" == "pixi" ]]; then + echo "Setting env vars for $MNE_CI_KIND" + echo "MNE_LOGGING_LEVEL=warning" | tee -a $GITHUB_ENV + echo "MNE_QT_BACKEND=PySide6" | tee -a $GITHUB_ENV + # Our cache_dir test has problems when the path is too long, so prevent it from getting too long + if [[ "$RUNNER_OS" == "macOS" ]]; then + echo "PYTEST_DEBUG_TEMPROOT=/tmp" | tee -a $GITHUB_ENV + fi else echo "✕ ERROR: Unrecognized MNE_CI_KIND=${MNE_CI_KIND}" exit 1 diff --git a/tools/github_actions_test.sh b/tools/github_actions_test.sh index 8a84e2b7ef8..29d1b7d575e 100755 --- a/tools/github_actions_test.sh +++ b/tools/github_actions_test.sh @@ -2,6 +2,7 @@ set -eo pipefail + if [[ "${CI_OS_NAME}" == "ubuntu"* ]]; then CONDITION="not (ultraslowtest or pgtest)" elif [[ "${CI_OS_NAME}" == "macos"* ]]; then diff --git a/tools/github_actions_verify_python.sh b/tools/github_actions_verify_python.sh index 9e5cd938782..e1297547ddd 100755 --- a/tools/github_actions_verify_python.sh +++ b/tools/github_actions_verify_python.sh @@ -29,6 +29,8 @@ elif [[ "${MNE_CI_KIND}" == "old" ]]; then WANT="mne-python/mne-python/.venv/bin" elif [[ "${MNE_CI_KIND}" == 'pip'* ]] || [[ "${MNE_CI_KIND}" == "minimal" ]]; then WANT="/hostedtoolcache/" +elif [[ "${MNE_CI_KIND}" == "pixi" ]]; then + WANT="mne-python/mne-python/tools/ci/macos-intel/.pixi/" else echo "✕ ERROR: Unrecognized MNE_CI_KIND=${MNE_CI_KIND}" exit 1 diff --git a/tools/write-pixi-toml.py b/tools/write-pixi-toml.py new file mode 100644 index 00000000000..8cdaafaad00 --- /dev/null +++ b/tools/write-pixi-toml.py @@ -0,0 +1,99 @@ +# Authors: The MNE-Python contributors. +# License: BSD-3-Clause +# Copyright the MNE-Python contributors. + +from pathlib import Path + +import tomlkit +import yaml + + +def pip_to_pixi(dependencies_list): + """Convert pip dependency specifier strings to a pixi-style dict.""" + out = dict() + for dep in dependencies_list: + if " " in dep: + name, version = dep.split(" ", maxsplit=1) + else: + name, version = dep, "*" + out[name] = "".join(version.split(" ")) # pixi hates internal spaces + return out + + +pypi_dependencies = ["pymef"] # "nest-asyncio2", "pyobjc-framework-Cocoa"] + +repo_root = Path(__file__).resolve().parent.parent +tests_yaml_fpath = repo_root / ".github" / "workflows" / "tests.yml" +pyproject_fpath = repo_root / "pyproject.toml" +pyproject = tomlkit.loads(pyproject_fpath.read_bytes()) +outfile = repo_root / "tools" / "ci" / "macos-intel" / "pixi.toml" + +# handle naming differences between PyPI and conda-forge +remapping = dict(neo="python-neo") + +# Specify the python version that our pixi job wants +with open(tests_yaml_fpath) as fid: + test_yaml = yaml.safe_load(fid) + +foo = test_yaml["jobs"]["pytest"]["strategy"]["matrix"]["include"] +for job in foo: + if job["os"] == "macos-15-intel": + python_version = job["python"] + # Pixi complains if we don't specify a patch version + if len(python_version.split(".")) <= 2: + python_version += ".*" + break + +# in keys: build-system, dependency-groups, project, tool +# out keys: workspace, dependencies, pypi-dependencies (may need tasks) +out = dict() +workspace = dict( + authors=["MNE-Python contributors"], + channels=["conda-forge"], + name=pyproject["project"]["name"], + platforms=["osx-64"], + version="0.1.0", +) +dependencies = pyproject["project"]["dependencies"] +dependencies.extend(pyproject["dependency-groups"]["dev"]) +dependencies.extend(pyproject["dependency-groups"]["test"]) +dependencies.extend(pyproject["dependency-groups"]["test_extra"]) +dependencies.extend(pyproject["project"]["optional-dependencies"]["hdf5"]) +dependencies.extend(pyproject["project"]["optional-dependencies"]["full-no-qt"]) +dependencies.extend(pyproject["project"]["optional-dependencies"]["full-pyside6"]) +# exclude recursive MNE deps +dependencies = list( + filter(lambda x: isinstance(x, str) and "mne[" not in x, dependencies) +) +# strip out platform specifiers; for now this affects only pyobj-framework-cocoa, and +# since this pixi.toml is destined for macos-intel job, we want it in there so we're +# skipping writing the logic to parse the platform spec. +for ix, dep in enumerate(dependencies): + if (split_ix := dep.find(";")) >= 0: + dependencies[ix] = dep[:split_ix].strip() +# handle mismatch between names on PyPI and conda-forge +dependencies = [remapping.get(dep, dep) for dep in dependencies] + +# Add Python Version +dependencies.append(f"python {python_version}") + +# exclude pypi-only deps +dependencies = sorted(set(dependencies) - set(pypi_dependencies)) + +out = { + "workspace": workspace, + "dependencies": pip_to_pixi(dependencies), + "pypi-dependencies": pip_to_pixi(pypi_dependencies), +} + +doc = tomlkit.document() +doc.add( + tomlkit.comment( + "THIS FILE IS AUTO-GENERATED BY tools/write_pixi_toml.py AND WILL BE OVERWRITTEN" # noqa E501 + ) +) +doc.update(out) +# write the file +outfile.parent.mkdir(parents=True, exist_ok=True) +with open(outfile, "w") as fid: + tomlkit.dump(doc, fid, sort_keys=False)